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claude-son
| Author | SHA1 | Date | |
|---|---|---|---|
| 0bbd3deccb | |||
| 8f0fb11926 |
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@@ -68,46 +68,6 @@ class CBAM(nn.Module):
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return x
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class MultiScaleFeatureExtraction(nn.Module):
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"""Multi-scale feature extraction using dilated convolutions"""
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def __init__(self, channels):
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super().__init__()
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self.branch1 = nn.Sequential(
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nn.Conv2d(channels, channels // 4, 1),
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nn.BatchNorm2d(channels // 4),
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nn.LeakyReLU(0.1, inplace=True)
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)
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self.branch2 = nn.Sequential(
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nn.Conv2d(channels, channels // 4, 3, padding=2, dilation=2),
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nn.BatchNorm2d(channels // 4),
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nn.LeakyReLU(0.1, inplace=True)
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)
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self.branch3 = nn.Sequential(
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nn.Conv2d(channels, channels // 4, 3, padding=4, dilation=4),
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nn.BatchNorm2d(channels // 4),
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nn.LeakyReLU(0.1, inplace=True)
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)
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self.branch4 = nn.Sequential(
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nn.Conv2d(channels, channels // 4, 3, padding=8, dilation=8),
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nn.BatchNorm2d(channels // 4),
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nn.LeakyReLU(0.1, inplace=True)
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)
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self.fusion = nn.Sequential(
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nn.Conv2d(channels, channels, 1),
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nn.BatchNorm2d(channels),
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nn.LeakyReLU(0.1, inplace=True)
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)
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def forward(self, x):
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b1 = self.branch1(x)
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b2 = self.branch2(x)
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b3 = self.branch3(x)
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b4 = self.branch4(x)
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out = torch.cat([b1, b2, b3, b4], dim=1)
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out = self.fusion(out)
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return out + x # Residual connection
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class ConvBlock(nn.Module):
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"""Convolutional block with Conv2d -> BatchNorm -> LeakyReLU"""
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def __init__(self, in_channels, out_channels, kernel_size=3, padding=1, dropout=0.0):
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@@ -140,6 +100,26 @@ class ResidualConvBlock(nn.Module):
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return self.relu(out)
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class DilatedResidualBlock(nn.Module):
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"""Residual block with dilated convolutions for larger receptive field"""
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def __init__(self, channels, dilation=2, dropout=0.0):
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super().__init__()
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self.conv1 = nn.Conv2d(channels, channels, 3, padding=dilation, dilation=dilation)
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self.bn1 = nn.BatchNorm2d(channels)
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self.conv2 = nn.Conv2d(channels, channels, 3, padding=dilation, dilation=dilation)
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self.bn2 = nn.BatchNorm2d(channels)
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self.relu = nn.LeakyReLU(0.1, inplace=True)
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self.dropout = nn.Dropout2d(dropout) if dropout > 0 else nn.Identity()
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def forward(self, x):
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residual = x
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out = self.relu(self.bn1(self.conv1(x)))
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out = self.dropout(out)
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out = self.bn2(self.conv2(out))
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out = out + residual
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return self.relu(out)
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class DownBlock(nn.Module):
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"""Downsampling block with conv blocks, residual connection, attention, and max pooling"""
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def __init__(self, in_channels, out_channels, dropout=0.1):
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@@ -198,12 +178,12 @@ class MyModel(nn.Module):
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self.down3 = DownBlock(base_channels * 4, base_channels * 8, dropout=dropout)
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self.down4 = DownBlock(base_channels * 8, base_channels * 16, dropout=dropout)
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# Bottleneck with multiple residual blocks and multi-scale features
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# Bottleneck with multi-scale dilated convolutions (ASPP-style)
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self.bottleneck = nn.Sequential(
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ConvBlock(base_channels * 16, base_channels * 16, dropout=dropout),
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ResidualConvBlock(base_channels * 16, dropout=dropout),
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MultiScaleFeatureExtraction(base_channels * 16),
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ResidualConvBlock(base_channels * 16, dropout=dropout),
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DilatedResidualBlock(base_channels * 16, dilation=2, dropout=dropout),
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DilatedResidualBlock(base_channels * 16, dilation=4, dropout=dropout),
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ResidualConvBlock(base_channels * 16, dropout=dropout),
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CBAM(base_channels * 16)
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)
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@@ -10,50 +10,11 @@ import numpy as np
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import random
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import glob
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import os
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from PIL import Image, ImageEnhance, ImageFilter
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from PIL import Image, ImageEnhance
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IMAGE_DIMENSION = 100
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class DataAugmentation:
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"""Data augmentation pipeline for improved generalization"""
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def __init__(self, p=0.5):
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self.p = p
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def __call__(self, image: Image.Image) -> Image.Image:
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# Random horizontal flip
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if random.random() < self.p:
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image = image.transpose(Image.FLIP_LEFT_RIGHT)
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# Random vertical flip
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if random.random() < self.p * 0.5:
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image = image.transpose(Image.FLIP_TOP_BOTTOM)
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# Random rotation (90 degree increments)
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if random.random() < self.p * 0.3:
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angle = random.choice([90, 180, 270])
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image = image.rotate(angle)
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# Color jittering
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if random.random() < self.p * 0.4:
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# Brightness
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enhancer = ImageEnhance.Brightness(image)
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image = enhancer.enhance(random.uniform(0.85, 1.15))
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if random.random() < self.p * 0.4:
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# Contrast
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enhancer = ImageEnhance.Contrast(image)
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image = enhancer.enhance(random.uniform(0.85, 1.15))
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if random.random() < self.p * 0.3:
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# Saturation
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enhancer = ImageEnhance.Color(image)
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image = enhancer.enhance(random.uniform(0.85, 1.15))
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return image
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def create_arrays_from_image(image_array: np.ndarray, offset: tuple, spacing: tuple) -> tuple[np.ndarray, np.ndarray]:
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image_array = np.transpose(image_array, (2, 0, 1))
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known_array = np.zeros_like(image_array)
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@@ -77,42 +38,74 @@ def preprocess(input_array: np.ndarray):
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class ImageDataset(torch.utils.data.Dataset):
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"""
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Dataset class for loading images from a folder with augmentation
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Dataset class for loading images from a folder with data augmentation
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"""
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def __init__(self, datafolder: str, augment: bool = True):
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self.imagefiles = sorted(glob.glob(os.path.join(datafolder,"**","*.jpg"),recursive=True))
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self.augment = augment
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self.augmentation = DataAugmentation(p=0.5) if augment else None
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def __len__(self):
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return len(self.imagefiles)
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def augment_image(self, image: Image) -> Image:
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"""Apply random augmentations to image"""
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# Random horizontal flip
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if random.random() > 0.5:
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image = image.transpose(Image.FLIP_LEFT_RIGHT)
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# Random vertical flip
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if random.random() > 0.5:
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image = image.transpose(Image.FLIP_TOP_BOTTOM)
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# Random rotation (90, 180, 270 degrees)
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if random.random() > 0.5:
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angle = random.choice([90, 180, 270])
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image = image.rotate(angle)
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# Random brightness adjustment
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if random.random() > 0.5:
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enhancer = ImageEnhance.Brightness(image)
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factor = random.uniform(0.8, 1.2)
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image = enhancer.enhance(factor)
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# Random contrast adjustment
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if random.random() > 0.5:
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enhancer = ImageEnhance.Contrast(image)
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factor = random.uniform(0.8, 1.2)
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image = enhancer.enhance(factor)
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# Random color adjustment
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if random.random() > 0.5:
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enhancer = ImageEnhance.Color(image)
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factor = random.uniform(0.8, 1.2)
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image = enhancer.enhance(factor)
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return image
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def __getitem__(self, idx:int):
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index = int(idx)
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image = Image.open(self.imagefiles[index]).convert('RGB')
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# Apply augmentation before resize
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if self.augment and self.augmentation is not None:
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image = self.augmentation(image)
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image = Image.open(self.imagefiles[index])
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image = resize(image)
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# Apply augmentation if enabled
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if self.augment:
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image = self.augment_image(image)
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image = np.asarray(image)
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image = preprocess(image)
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# More varied spacing for better generalization
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spacing_x = random.randint(2, 8)
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spacing_y = random.randint(2, 8)
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offset_x = random.randint(0, min(spacing_x - 1, 8))
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offset_y = random.randint(0, min(spacing_y - 1, 8))
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# Vary spacing and offset more for additional diversity
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spacing_x = random.randint(2,7)
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spacing_y = random.randint(2,7)
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offset_x = random.randint(0,10)
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offset_y = random.randint(0,10)
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spacing = (spacing_x, spacing_y)
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offset = (offset_x, offset_y)
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input_array, known_array = create_arrays_from_image(image.copy(), offset, spacing)
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target_image = torch.from_numpy(np.transpose(image, (2,0,1)))
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input_array = torch.from_numpy(input_array)
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known_array = torch.from_numpy(known_array)
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input_array = torch.cat((input_array, known_array), dim=0)
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return input_array, target_image
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@@ -24,22 +24,22 @@ if __name__ == '__main__':
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config_dict['results_path'] = os.path.join(project_root, "results")
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config_dict['data_path'] = os.path.join(project_root, "data", "dataset")
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config_dict['device'] = None
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config_dict['learningrate'] = 2e-4 # Slightly lower for stable training
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config_dict['weight_decay'] = 5e-5 # Reduced weight decay
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config_dict['learningrate'] = 2e-4 # Slightly lower for more stable training
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config_dict['weight_decay'] = 5e-5 # Reduced for less aggressive regularization
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config_dict['n_updates'] = 8000 # More updates for better convergence
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config_dict['batchsize'] = 8 # Smaller batch for better gradient estimates
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config_dict['batchsize'] = 12 # Larger batch for more stable gradients
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config_dict['early_stopping_patience'] = 15 # More patience for complex model
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config_dict['use_wandb'] = False
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config_dict['print_train_stats_at'] = 10
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config_dict['print_stats_at'] = 100
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config_dict['plot_at'] = 300
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config_dict['validate_at'] = 300 # Validate more frequently
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config_dict['plot_at'] = 400
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config_dict['validate_at'] = 200 # Validate frequently but not too often
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network_config = {
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'n_in_channels': 4,
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'base_channels': 56, # Increased capacity for better feature learning
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'dropout': 0.08 # Slightly less dropout with augmentation
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'base_channels': 32, # Smaller base for efficiency, depth compensates
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'dropout': 0.15 # Slightly more regularization with augmentation
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}
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config_dict['network_config'] = network_config
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@@ -10,7 +10,6 @@ from utils import plot, evaluate_model
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import torch
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import torch.nn as nn
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import torch.nn.functional as F
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import numpy as np
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import os
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@@ -21,58 +20,15 @@ from torch.optim.lr_scheduler import CosineAnnealingWarmRestarts
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import wandb
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def gaussian_kernel(window_size=11, sigma=1.5):
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"""Create a Gaussian kernel for SSIM computation"""
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x = torch.arange(window_size).float() - window_size // 2
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gauss = torch.exp(-x.pow(2) / (2 * sigma ** 2))
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kernel = gauss / gauss.sum()
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kernel_2d = kernel.unsqueeze(1) * kernel.unsqueeze(0)
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return kernel_2d.unsqueeze(0).unsqueeze(0)
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class SSIMLoss(nn.Module):
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"""Structural Similarity Index Loss for perceptual quality"""
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def __init__(self, window_size=11, sigma=1.5):
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super().__init__()
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self.window_size = window_size
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kernel = gaussian_kernel(window_size, sigma)
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self.register_buffer('kernel', kernel)
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self.C1 = 0.01 ** 2
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self.C2 = 0.03 ** 2
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def forward(self, pred, target):
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# Apply to each channel
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channels = pred.shape[1]
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kernel = self.kernel.repeat(channels, 1, 1, 1)
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mu_pred = F.conv2d(pred, kernel, padding=self.window_size // 2, groups=channels)
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mu_target = F.conv2d(target, kernel, padding=self.window_size // 2, groups=channels)
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mu_pred_sq = mu_pred.pow(2)
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mu_target_sq = mu_target.pow(2)
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mu_pred_target = mu_pred * mu_target
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sigma_pred_sq = F.conv2d(pred * pred, kernel, padding=self.window_size // 2, groups=channels) - mu_pred_sq
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sigma_target_sq = F.conv2d(target * target, kernel, padding=self.window_size // 2, groups=channels) - mu_target_sq
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sigma_pred_target = F.conv2d(pred * target, kernel, padding=self.window_size // 2, groups=channels) - mu_pred_target
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ssim = ((2 * mu_pred_target + self.C1) * (2 * sigma_pred_target + self.C2)) / \
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((mu_pred_sq + mu_target_sq + self.C1) * (sigma_pred_sq + sigma_target_sq + self.C2))
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return 1 - ssim.mean()
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class CombinedLoss(nn.Module):
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"""Combined loss: MSE + L1 + SSIM + Edge for comprehensive image reconstruction"""
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def __init__(self, mse_weight=1.0, l1_weight=0.5, edge_weight=0.15, ssim_weight=0.3):
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"""Combined loss: MSE + L1 + Edge-aware component for better reconstruction"""
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def __init__(self, mse_weight=0.7, l1_weight=0.8, edge_weight=0.2):
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super().__init__()
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self.mse_weight = mse_weight
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self.l1_weight = l1_weight
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self.edge_weight = edge_weight
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self.ssim_weight = ssim_weight
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self.mse = nn.MSELoss()
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self.l1 = nn.L1Loss()
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self.ssim = SSIMLoss(window_size=7)
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# Sobel filters for edge detection
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sobel_x = torch.tensor([[-1, 0, 1], [-2, 0, 2], [-1, 0, 1]], dtype=torch.float32).view(1, 1, 3, 3)
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@@ -82,10 +38,10 @@ class CombinedLoss(nn.Module):
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def edge_loss(self, pred, target):
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"""Compute edge-aware loss using Sobel filters"""
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pred_edge_x = F.conv2d(pred, self.sobel_x, padding=1, groups=3)
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pred_edge_y = F.conv2d(pred, self.sobel_y, padding=1, groups=3)
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target_edge_x = F.conv2d(target, self.sobel_x, padding=1, groups=3)
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target_edge_y = F.conv2d(target, self.sobel_y, padding=1, groups=3)
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pred_edge_x = torch.nn.functional.conv2d(pred, self.sobel_x, padding=1, groups=3)
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pred_edge_y = torch.nn.functional.conv2d(pred, self.sobel_y, padding=1, groups=3)
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target_edge_x = torch.nn.functional.conv2d(target, self.sobel_x, padding=1, groups=3)
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target_edge_y = torch.nn.functional.conv2d(target, self.sobel_y, padding=1, groups=3)
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edge_loss = self.l1(pred_edge_x, target_edge_x) + self.l1(pred_edge_y, target_edge_y)
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return edge_loss
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@@ -94,12 +50,8 @@ class CombinedLoss(nn.Module):
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mse_loss = self.mse(pred, target)
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l1_loss = self.l1(pred, target)
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edge_loss = self.edge_loss(pred, target)
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ssim_loss = self.ssim(pred, target)
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total_loss = (self.mse_weight * mse_loss +
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self.l1_weight * l1_loss +
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self.edge_weight * edge_loss +
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self.ssim_weight * ssim_loss)
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total_loss = self.mse_weight * mse_loss + self.l1_weight * l1_loss + self.edge_weight * edge_loss
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return total_loss
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@@ -132,20 +84,24 @@ def train(seed, testset_ratio, validset_ratio, data_path, results_path, early_st
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plotpath = os.path.join(results_path, "plots")
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os.makedirs(plotpath, exist_ok=True)
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image_dataset = datasets.ImageDataset(datafolder=data_path)
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# Create dataset with augmentation for training, without for validation/test
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image_dataset_full = datasets.ImageDataset(datafolder=data_path, augment=False)
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n_total = len(image_dataset)
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n_total = len(image_dataset_full)
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n_test = int(n_total * testset_ratio)
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n_valid = int(n_total * validset_ratio)
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n_train = n_total - n_test - n_valid
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indices = np.random.permutation(n_total)
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dataset_train = Subset(image_dataset, indices=indices[0:n_train])
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dataset_valid = Subset(image_dataset, indices=indices[n_train:n_train + n_valid])
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dataset_test = Subset(image_dataset, indices=indices[n_train + n_valid:n_total])
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assert len(image_dataset) == len(dataset_train) + len(dataset_test) + len(dataset_valid)
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# Create augmented dataset for training
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image_dataset_train = datasets.ImageDataset(datafolder=data_path, augment=True)
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dataset_train = Subset(image_dataset_train, indices=indices[0:n_train])
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dataset_valid = Subset(image_dataset_full, indices=indices[n_train:n_train + n_valid])
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dataset_test = Subset(image_dataset_full, indices=indices[n_train + n_valid:n_total])
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del image_dataset
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assert n_total == len(dataset_train) + len(dataset_test) + len(dataset_valid)
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del image_dataset_full, image_dataset_train
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dataloader_train = DataLoader(dataset=dataset_train, batch_size=batchsize,
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num_workers=0, shuffle=True)
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@@ -159,15 +115,19 @@ def train(seed, testset_ratio, validset_ratio, data_path, results_path, early_st
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network.to(device)
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network.train()
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# defining the loss - combined loss for better reconstruction
|
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combined_loss = CombinedLoss(mse_weight=1.0, l1_weight=0.5, edge_weight=0.15, ssim_weight=0.3).to(device)
|
||||
# defining the loss - combined loss with optimized weights
|
||||
combined_loss = CombinedLoss(mse_weight=0.7, l1_weight=0.8, edge_weight=0.2).to(device)
|
||||
mse_loss = torch.nn.MSELoss() # Keep for evaluation
|
||||
|
||||
# defining the optimizer with AdamW for better weight decay handling
|
||||
optimizer = torch.optim.AdamW(network.parameters(), lr=learningrate, weight_decay=weight_decay)
|
||||
|
||||
# Learning rate scheduler for better convergence
|
||||
scheduler = CosineAnnealingWarmRestarts(optimizer, T_0=50, T_mult=2, eta_min=1e-6)
|
||||
# Learning rate scheduler with better configuration
|
||||
scheduler = CosineAnnealingWarmRestarts(optimizer, T_0=100, T_mult=2, eta_min=1e-7)
|
||||
|
||||
# Mixed precision training for faster computation and lower memory usage
|
||||
scaler = torch.cuda.amp.GradScaler() if device.type == 'cuda' else None
|
||||
use_amp = scaler is not None
|
||||
|
||||
if use_wandb:
|
||||
wandb.watch(network, mse_loss, log="all", log_freq=10)
|
||||
@@ -176,10 +136,13 @@ def train(seed, testset_ratio, validset_ratio, data_path, results_path, early_st
|
||||
counter = 0
|
||||
best_validation_loss = np.inf
|
||||
loss_list = []
|
||||
accumulation_steps = 2 # Gradient accumulation for effective larger batch size
|
||||
|
||||
saved_model_path = os.path.join(results_path, "best_model.pt")
|
||||
|
||||
print(f"Started training on device {device}")
|
||||
print(f"Using mixed precision: {use_amp}")
|
||||
print(f"Gradient accumulation steps: {accumulation_steps}")
|
||||
|
||||
while i < n_updates:
|
||||
|
||||
@@ -190,21 +153,33 @@ def train(seed, testset_ratio, validset_ratio, data_path, results_path, early_st
|
||||
if (i + 1) % print_train_stats_at == 0:
|
||||
print(f'Update Step {i + 1} of {n_updates}: Current loss: {loss_list[-1]}')
|
||||
|
||||
optimizer.zero_grad()
|
||||
|
||||
# Use mixed precision if available
|
||||
if use_amp:
|
||||
with torch.cuda.amp.autocast():
|
||||
output = network(input)
|
||||
|
||||
loss = combined_loss(output, target)
|
||||
|
||||
loss = loss / accumulation_steps
|
||||
scaler.scale(loss).backward()
|
||||
else:
|
||||
output = network(input)
|
||||
loss = combined_loss(output, target)
|
||||
loss = loss / accumulation_steps
|
||||
loss.backward()
|
||||
|
||||
# Gradient clipping for training stability
|
||||
# Gradient accumulation - update weights every accumulation_steps
|
||||
if (i + 1) % accumulation_steps == 0:
|
||||
if use_amp:
|
||||
scaler.unscale_(optimizer)
|
||||
torch.nn.utils.clip_grad_norm_(network.parameters(), max_norm=1.0)
|
||||
scaler.step(optimizer)
|
||||
scaler.update()
|
||||
else:
|
||||
torch.nn.utils.clip_grad_norm_(network.parameters(), max_norm=1.0)
|
||||
|
||||
optimizer.step()
|
||||
scheduler.step(i + len(loss_list) / len(dataloader_train))
|
||||
optimizer.zero_grad()
|
||||
scheduler.step(i / n_updates)
|
||||
|
||||
loss_list.append(loss.item())
|
||||
loss_list.append(loss.item() * accumulation_steps)
|
||||
|
||||
# writing the stats to wandb
|
||||
if use_wandb and (i+1) % print_stats_at == 0:
|
||||
@@ -213,7 +188,9 @@ def train(seed, testset_ratio, validset_ratio, data_path, results_path, early_st
|
||||
# plotting
|
||||
if (i + 1) % plot_at == 0:
|
||||
print(f"Plotting images, current update {i + 1}")
|
||||
plot(input.cpu().numpy(), target.detach().cpu().numpy(), output.detach().cpu().numpy(), plotpath, i)
|
||||
# Convert to float32 for matplotlib compatibility (mixed precision may produce float16)
|
||||
plot(input.float().cpu().numpy(), target.detach().float().cpu().numpy(),
|
||||
output.detach().float().cpu().numpy(), plotpath, i)
|
||||
|
||||
# evaluating model every validate_at sample
|
||||
if (i + 1) % validate_at == 0:
|
||||
|
||||
@@ -81,42 +81,9 @@ def read_compressed_file(file_path: str):
|
||||
return input_arrays, known_arrays
|
||||
|
||||
|
||||
def apply_tta(model, input_tensor, device):
|
||||
def create_predictions(model_config, state_dict_path, testset_path, device, save_path, plot_path, plot_at=20, rmse_value=None):
|
||||
"""
|
||||
Apply Test-Time Augmentation for better predictions.
|
||||
Averages predictions from original and augmented versions.
|
||||
"""
|
||||
outputs = []
|
||||
|
||||
# Original
|
||||
out = model(input_tensor)
|
||||
outputs.append(out)
|
||||
|
||||
# Horizontal flip
|
||||
flipped_h = torch.flip(input_tensor, dims=[3])
|
||||
out_h = model(flipped_h)
|
||||
out_h = torch.flip(out_h, dims=[3])
|
||||
outputs.append(out_h)
|
||||
|
||||
# Vertical flip
|
||||
flipped_v = torch.flip(input_tensor, dims=[2])
|
||||
out_v = model(flipped_v)
|
||||
out_v = torch.flip(out_v, dims=[2])
|
||||
outputs.append(out_v)
|
||||
|
||||
# Both flips
|
||||
flipped_hv = torch.flip(input_tensor, dims=[2, 3])
|
||||
out_hv = model(flipped_hv)
|
||||
out_hv = torch.flip(out_hv, dims=[2, 3])
|
||||
outputs.append(out_hv)
|
||||
|
||||
# Average all predictions
|
||||
return torch.stack(outputs, dim=0).mean(dim=0)
|
||||
|
||||
|
||||
def create_predictions(model_config, state_dict_path, testset_path, device, save_path, plot_path, plot_at=20, rmse_value=None, use_tta=True):
|
||||
"""
|
||||
Create predictions with optional Test-Time Augmentation for improved results.
|
||||
Here, one might needs to adjust the code based on the used preprocessing
|
||||
"""
|
||||
|
||||
if device is None:
|
||||
@@ -127,7 +94,7 @@ def create_predictions(model_config, state_dict_path, testset_path, device, save
|
||||
device = torch.device(device)
|
||||
|
||||
model = MyModel(**model_config)
|
||||
model.load_state_dict(torch.load(state_dict_path, weights_only=True))
|
||||
model.load_state_dict(torch.load(state_dict_path))
|
||||
model.to(device)
|
||||
model.eval()
|
||||
|
||||
@@ -144,14 +111,9 @@ def create_predictions(model_config, state_dict_path, testset_path, device, save
|
||||
with torch.no_grad():
|
||||
for i in range(len(input_arrays)):
|
||||
print(f"Processing image {i + 1}/{len(input_arrays)}")
|
||||
input_array = torch.from_numpy(input_arrays[i]).to(device)
|
||||
input_tensor = input_array.unsqueeze(0) if input_array.dim() == 3 else input_array
|
||||
|
||||
if use_tta:
|
||||
output = apply_tta(model, input_tensor, device)
|
||||
else:
|
||||
output = model(input_tensor)
|
||||
|
||||
input_array = torch.from_numpy(input_arrays[i]).to(
|
||||
device)
|
||||
output = model(input_array.unsqueeze(0) if hasattr(input_array, 'dim') and input_array.dim() == 3 else input_array)
|
||||
output = output.cpu().numpy()
|
||||
predictions.append(output)
|
||||
|
||||
|
||||
Reference in New Issue
Block a user